10gb.part1.rar Access

Software for motif discovery and next generation sequencing analysis

HOMER (Hypergeometric Optimization of Motif EnRichment) is a suite of tools for Motif Discovery and ChIP-Seq analysis. It is a collection of command line programs for unix-style operating systems written in mostly perl and c++. Homer was primarily written as a de novo motif discovery algorithm that is well suited for finding 8-12 bp motifs in large scale genomics data.

Hardware Requirements (recommended): 2+ Gb memory (4-8+ Gb), 10+ Gb Hard Drive space (50+ Gb)
Software Requirements: Unix compatible OS (or cygwin), perl, gcc, make, wget (optional for full functionality: R, DESeq2, blat, bedGraphToBigWig, liftOver)
License: GPLv3

HOMER works on pretty much any Linux/UNIX systems, including MacOS (if Xcode compilers are installed) and on Windows using either cygwin or a Linux subsystem.

If you are looking specifically for HOMER2, you are in the right place! HOMER2 is integrated into HOMER.

Full Program Download

10gb.part1.rar Access

The filename indicates a specific part of a larger, multi-volume compressed archive created with WinRAR . Key Details of This File Type

: When a single file or a collection of files is too large (in this case, likely around 10GB or more), software like WinRAR allows users to "split" it into smaller chunks for easier sharing or storage. 10GB.part1.rar

: The .rar extension is a proprietary archive format that supports error recovery and high compression ratios. Common Uses Files named this way are frequently found in: The filename indicates a specific part of a

: Use WinRAR (Windows), The Unarchiver (macOS), or 7-Zip (Windows/Linux). Common Uses Files named this way are frequently

: This file is the first volume of the set. To successfully extract the contents, you must have all subsequent parts (e.g., part2.rar , part3.rar , etc.) saved in the same folder.

: Ensure you have downloaded every numbered part of the archive.

: Right-click on 10GB.part1.rar and select "Extract Here" or "Extract to..." . The software will automatically detect and pull data from the other parts to reconstruct the original file.

Program Components and Older Versions

homer2 program - key executable for HOMER motif discovery (homerCppOnly.*.zip). (This archive actually contains all of the c++ executable, not just homer2). Unzip in the desired directory and simply type "make" to compile the program.

The configuration script really doesn't deal with older versions, but you can download older versions yourself should you really feel like using inferior data or software!

Old Versions of HOMER Software
Old Versions of Organism Packages
Old Versions of Promoter Packages
Old Versions of Genome Packages

Update Information

Change Log - Short description of recent changes

update.txt - Current HOMER configuration list (Currently support human hg17/hg18/hg19, mouse mm8/mm9, rat rn4, X. tropicalis xenTro2, drosophila dm3, and C. elegans ce6, Zebrafish danRer7, yeast sacCer2, Arabidopsis tair10, Rice msu6, Pombe ASM294v1)

Can't figure something out? Questions, comments, concerns, or other feedback:
cbenner@ucsd.edu